Hg_chrom6_TN10mRNA_11205
Organism: Heterodera glycines Gene Locus: chr6:100054-104661 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.719 | 1.486 | 0.937 | 0.853 | 0.997 | 1.269 | 0.417 | 1.134 | 1.375 | 1.505 | 1.125 | 2.062 | 1.604 | 0.634 | 1.178 | 0.619 | 0.913 | 0.625 | 1.269 | 1.273 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10563
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
34-54
|
0.751
|
— | — | — | — |
0.004
|
— | — |
0.055
|
0.102
|
0.002
|
0.216
|
0.358
|
0.230
|
0.899
|
0.003
|
0.157
|
0.583
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010176
|
1.000
|
1.000
|
Hsc_gene_23307.t1
|
Hsc_gene_23307.t1
|
— | — |
KAI1728337.1 core-2/I-Branching enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.872|GO:0009987_0.734|GO:0003674_0.689|GO:0005575_0.626|GO:0110165_0.624|GO:0008152_0.620|GO:0044237_0.595|GO:0003824_0.574|GO:0005622_0.557|GO:0016740_0.522|GO:0009058_0.503|GO:0016020_0.502
|
IPR003406+125-380+
|
— |
PF02485+125-380+Core-2/I-Branching_enzyme
|
— |
PTHR46671+45-446+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-485
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
56955.930
|
8.773
|
15.500
|
26.598
|
14.021
|
47.835
|
52.165
|
15.464
|
11.134
|
41.031
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
163.508
|
38.723
|
131.843
|
65.802
|
27.917
|
22.079
|
128.584
|
60.212
|
334.532
|
286.264
|
306.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.538
|
0.628
|
-0.895
|
-1.269
|
— |
2.552
|
1.339
|
1.237
|
— | — | — | — | — |
No JSON data available for plots.