Hg_chrom6_TN10mRNA_11206
Organism: Heterodera glycines Gene Locus: chr6:105947-111370 Feature type: polypeptideProtein Sequence
Length: 1,206
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.569 | 2.044 | 0.739 | 0.143 | 1.161 | 1.999 | 0.296 | 1.41 | 1.124 | 1.087 | 1.206 | 1.463 | 0.944 | 1.228 | 0.948 | 1.445 | 1.006 | 0.565 | 0.638 | 0.878 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10564
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
PLKKRRN,RRRLKSESNTDKRRFL,KKLKNGTPISLEPKCNRR,KKRRNIVKQQDEYIKKKSG
|
— | — | — | — |
1-22
|
0.937
|
0.890
|
0.000
|
0.000
|
0.678
|
0.167
|
0.007
|
0.538
|
0.091
|
0.062
|
0.062
|
0.065
|
0.041
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002281
|
3.000
|
1.000
|
Hsc_gene_24678.t1
|
— | — | — |
KAI3421214.1 hypothetical protein GPALN_014841 [Globodera pallida]
|
MBS9779006
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-876
|
1.000
|
877-1206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.906
|
138407.200
|
9.563
|
36.000
|
26.451
|
10.033
|
59.287
|
40.713
|
15.423
|
11.028
|
47.015
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
996.469
|
1.820
|
78.521
|
219.649
|
58.342
|
9.447
|
5.469
|
7.726
|
1654.682
|
2975.675
|
2409.535
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.192
|
6.766
|
1.593
|
-1.941
|
-2.614
|
— | — | — | — | — |
-5.454
|
— | — |