Hg_chrom6_TN10mRNA_11207
Organism: Heterodera glycines Gene Locus: chr6:111737-113252 Feature type: polypeptideProtein Sequence
Length: 226
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.132 | 1.046 | 2.899 | 0.811 | 1.021 | 1.001 | 1.77 | 1.18 | 1.017 | 1.14 | 0.521 | 1.721 | 0.936 | 0.813 | 0.822 | 0.508 | 0.737 | 1.021 | 0.911 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10565
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-37
|
— |
0.897
|
— |
0.000
|
0.337
|
0.213
|
0.049
|
0.260
|
0.132
|
0.108
|
0.104
|
0.017
|
0.195
|
0.922
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010177
|
1.000
|
1.000
|
Hsc_gene_23305.t1
|
Hsc_gene_23305.t1
|
— |
O43291.2 Kunitz-type protease inhibitor 2 [Homo sapiens]
|
KAI1720699.1 kunitz/Bovine pancreatic trypsin inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.756|GO:0005575_0.686|GO:0110165_0.675|GO:0003674_0.629
|
IPR002223+55-113_56-112_57-112_87-97_97-112_166-222_167-221_168-221+|IPR020901+90-108+|IPR036880+45-125_54-113_158-223_162-225+|IPR053014+54-223+
|
SM00131+55-113_166-222+
|
PF00014+56-112_167-221+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46339+54-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-226
|
1irh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
25296.030
|
7.581
|
6.000
|
25.664
|
14.159
|
43.363
|
56.637
|
15.044
|
10.619
|
51.770
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
257.917
|
42.855
|
15.168
|
19.627
|
253.919
|
1125.441
|
9.556
|
116.442
|
0.000
|
534.758
|
305.576
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.726
|
-1.263
|
— |
3.662
|
2.163
|
-6.872
|
-3.380
|
-3.463
|
-9.877
|
5.152
|
— | — | — |