Hg_chrom6_TN10mRNA_11208
Organism: Heterodera glycines Gene Locus: chr6:114289-115921 Feature type: polypeptideProtein Sequence
Length: 161
(Signal peptide: 1-39)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 1.3 | 0.452 | 2.142 | 1.035 | 0.956 | 1.183 | 1.242 | 1.104 | 0.671 | 1.223 | 1.827 | 1.38 | 0.836 | 1.141 | 1.154 | 0.916 | 0.282 | 0.956 | 1.279 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10566
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.923
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-39
|
— |
0.649
|
— |
0.000
|
0.304
|
0.220
|
0.050
|
0.214
|
0.137
|
0.064
|
0.074
|
0.024
|
0.215
|
0.971
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010178
|
1.000
|
1.000
|
Hsc_gene_23304.t1
|
Hsc_gene_23304.t1
|
— | — |
KAI1720697.1 kunitz/Bovine pancreatic trypsin inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.832|GO:0005575_0.713|GO:0110165_0.704|GO:0003674_0.649|GO:0065007_0.517
|
IPR002223+98-156_99-155_100-155+|IPR036880+90-156_95-160+|IPR053014+66-159+
|
SM00131+98-156+
|
PF00014+99-155+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46339+66-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.891
|
18018.530
|
8.791
|
10.000
|
24.845
|
13.043
|
47.826
|
52.174
|
16.149
|
8.696
|
50.311
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
287.125
|
32.420
|
46.145
|
319.664
|
299.094
|
636.841
|
198.035
|
106.866
|
12.439
|
632.194
|
366.585
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.164
|
2.901
|
— |
1.105
|
-1.675
|
-2.694
|
1.038
|
-5.795
|
— | — | — | — |