Hg_chrom6_TN10mRNA_11209
Organism: Heterodera glycines Gene Locus: chr6:116027-120221 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.195 | 0.706 | 0.892 | 0.886 | 0.74 | 1.138 | 0.723 | 0.818 | 1.402 | 1.547 | 1.097 | 1.1 | 1.363 | 0.764 | 1.097 | 0.768 | 0.689 | 0.885 | 1.797 | 1.1 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10567
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.520
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
PLLKRSR,KKQQPKQQQNAEQQKKKVI
|
43-64
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.224
|
0.336
|
0.034
|
0.234
|
0.934
|
0.197
|
0.133
|
0.030
|
0.157
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010179
|
1.000
|
1.000
|
Hsc_gene_23303.t1
|
Hsc_gene_23303.t1
|
— |
O16881.1 3beta-hydroxysteroid dehydrogenase dhs-16 [Caenorhabditis elegans]
|
KAI3421217.1 Protein CBR-dhs-20 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.801|GO:0008150_0.801|GO:0005575_0.668|GO:0110165_0.668|GO:0003824_0.660|GO:0016020_0.613|GO:0016491_0.582|GO:0008152_0.578|GO:0044238_0.560|GO:0009987_0.537|GO:0005622_0.536|GO:0016614_0.524|GO:0016616_0.524|GO:0043226_0.515
|
IPR002347+107-124_107-299_188-199_235-251_241-249_261-280_282-299+|IPR020904+248-276+|IPR036291+105-372+
|
— |
PF00106+107-299+short_chain_dehydrogenase
|
— |
PTHR43313+81-398+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
419-428
|
1.000
|
1-418
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
48242.240
|
9.339
|
17.500
|
23.598
|
12.617
|
40.654
|
59.346
|
14.252
|
9.346
|
46.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
purple
|
564.457
|
943.514
|
957.963
|
234.780
|
1063.393
|
1073.585
|
209.615
|
512.789
|
295.671
|
374.380
|
340.647
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.207
|
-2.144
|
-1.920
|
2.146
|
— |
-2.348
|
-1.177
|
-1.147
|
— | — | — | — | — |
No JSON data available for plots.