Hg_chrom6_TN10mRNA_11211
Organism: Heterodera glycines Gene Locus: chr6:124915-129450 Feature type: polypeptideProtein Sequence
Length: 496
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.774 | 1.172 | 0.88 | 0.487 | 1.243 | 1.086 | 0.624 | 1.613 | 1.21 | 1.417 | 1.283 | 1.542 | 1.68 | 1.008 | 0.411 | 0.95 | 0.661 | 1.13 | 0.775 | 0.712 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10569
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.540
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRVK
|
— | — | — | — |
1-23
|
0.814
|
0.898
|
0.000
|
0.000
|
0.244
|
0.272
|
0.207
|
0.381
|
0.581
|
0.070
|
0.131
|
0.035
|
0.172
|
0.640
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010171
|
2.000
|
0.000
|
0.000
|
— | — | — |
XP_047022219.1 UDP-glycosyltransferase UGT5-like [Helicoverpa zea]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.798|GO:0003674_0.792|GO:0003824_0.698|GO:0009987_0.670|GO:0016740_0.625|GO:0016757_0.592|GO:0016758_0.591|GO:0008194_0.583|GO:0015020_0.583|GO:0005575_0.582|GO:0050896_0.574|GO:0110165_0.571|GO:0005622_0.516|GO:0042221_0.515|GO:0008152_0.509|GO:0065007_0.509
|
IPR002213+272-452+|IPR050271+44-470+
|
— |
PF00201+272-452+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+44-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-496
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
55829.320
|
6.404
|
-1.000
|
26.008
|
12.702
|
45.968
|
54.032
|
13.710
|
12.298
|
46.573
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
6993.501
|
21.698
|
1804.831
|
10145.819
|
5867.199
|
592.060
|
537.207
|
268.068
|
22961.756
|
6161.419
|
13361.564
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.153
|
8.735
|
2.598
|
-0.821
|
-3.294
|
— |
-1.244
|
1.141
|
1.784
|
— | — | — | — |