Hg_chrom6_TN10mRNA_11215
Organism: Heterodera glycines Gene Locus: chr6:145879-149844 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.481 | 1.362 | 0.517 | 1.248 | 0.96 | 0.624 | 1.311 | 1.165 | 0.962 | 1.248 | 1.322 | 0.52 | 0.504 | 0.917 | 1.07 | 1.351 | 0.681 | 2.881 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10572
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.854
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.469
|
0.247
|
0.017
|
0.614
|
0.148
|
0.160
|
0.153
|
0.005
|
0.102
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000888
|
3.000
|
3.000
|
Hsc_gene_12253.t1;Hsc_gene_12253.t2;Hsc_gene_15251.t1
|
Hsc_gene_12253.t2
|
— |
O61955.2 Eukaryotic translation initiation factor 4E-3 [Caenorhabditis elegans]
|
KAI3413709.1 Eukaryotic translation initiation factor 4E-3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003743|GO:0005737|GO:0006413
|
GO:0008150_0.884|GO:0005575_0.717|GO:0110165_0.667|GO:0003674_0.637|GO:0005622_0.637|GO:0009987_0.574|GO:0005488_0.572|GO:0005737_0.563|GO:0043226_0.528|GO:0043229_0.511|GO:0008152_0.510|GO:0065007_0.507|GO:0044238_0.502
|
IPR001040+23-248_66-238+|IPR019770+117-140+|IPR023398+43-252_59-258+
|
— |
PF01652+66-238+Eukaryotic_initiation_factor_4E
|
— |
PTHR11960+23-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45;245-267
|
1.000
|
46-244
|
3m94_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
30528.060
|
5.919
|
-2.500
|
30.337
|
11.236
|
56.180
|
43.820
|
15.356
|
14.981
|
50.187
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
861.761
|
382.495
|
618.386
|
677.582
|
809.219
|
944.178
|
1576.355
|
892.063
|
660.139
|
1062.496
|
890.057
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.463
|
0.688
|
0.241
|
0.224
|
0.237
|
0.751
|
— |
0.968
|
— | — | — | — | — |
No JSON data available for plots.