SCN Proteipedia

Hg_chrom6_TN10mRNA_11218

Organism: Heterodera glycines Gene Locus: chr6:164688-168433 Feature type: polypeptide

Protein Sequence

Length: 337

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.07	1.035	1.295	1.228	1.583	1.141	0.636	1.484	0.791	0.802	1.169	1.222	0.824	0.913	0.908	1.06	0.924	0.495	0.228	1.571	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_10575	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Not_Clustered	0.496

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.904	0.075	0.029	0.286	0.037	0.026	0.032	0.004	0.052	0.149

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010181	1.000	1.000	Hsc_gene_5254.t1	—	—	Q19203.2 Zinc finger protein unc-98 [Caenorhabditis elegans]	KAI3421222.1 Zinc finger protein unc-98 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.944\|GO:0003674_0.896\|GO:0009987_0.894\|GO:0005488_0.889\|GO:0005575_0.862\|GO:0110165_0.856\|GO:0005622_0.843\|GO:0032502_0.826\|GO:0048856_0.826\|GO:0032501_0.818\|GO:0007275_0.810\|GO:0043226_0.805\|GO:0043229_0.789\|GO:0030154_0.782\|GO:0048869_0.782\|GO:0016020_0.775\|GO:0005634_0.756\|GO:0043227_0.756\|GO:0043231_0.756\|GO:0005515_0.753\|GO:0048468_0.751\|GO:0016043_0.736\|GO:0071840_0.736\|GO:0009653_0.725\|GO:0043228_0.698\|GO:0043232_0.698\|GO:0006996_0.692\|GO:0048646_0.692\|GO:0009791_0.687\|GO:0044085_0.685\|GO:0061061_0.684\|GO:0022607_0.683\|GO:0007010_0.681\|GO:0007610_0.677\|GO:0040011_0.677\|GO:0070925_0.676\|GO:0097435_0.676\|GO:0030029_0.675\|GO:0030036_0.675\|GO:0042692_0.675\|GO:0007626_0.674\|GO:0140694_0.674\|GO:0036094_0.672\|GO:0043167_0.671\|GO:0009886_0.670\|GO:0010171_0.670\|GO:0010927_0.670\|GO:0030239_0.670\|GO:0031032_0.670\|GO:0032989_0.670\|GO:0040032_0.670\|GO:0043169_0.670\|GO:0051146_0.670\|GO:0055001_0.670\|GO:0055002_0.670\|GO:0046872_0.669\|GO:0046914_0.663\|GO:0008270_0.661\|GO:0005737_0.660\|GO:0008092_0.654\|GO:0099080_0.572\|GO:0099081_0.558\|GO:0099512_0.558\|GO:0030016_0.540\|GO:0030017_0.540\|GO:0031430_0.540\|GO:0031672_0.540\|GO:0043292_0.540	IPR013087+142-164_142-169_144-164_170-192_170-197_172-192_283-305_283-310_285-305+\|IPR036236+141-192_185-217_280-311+	SM00355+142-164_170-192_283-305+	PF00096+142-164_283-305+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:002530+281-313+Zinc_finger_protein	PTHR23226+38-311+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-130;337-337	1.000	131-336	1mey_G	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.627	37937.020	5.006	-10.000	31.751	11.573	53.709	46.291	15.134	16.617	50.742

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	560.275	482.417	1190.999	904.842	386.273	472.425	97.599	1199.624	366.872	400.730	386.219

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.075	0.770	-0.288	-1.259	0.305	-2.266	1.241	-3.478	—	—	—	—	—

No JSON data available for plots.

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