Hg_chrom6_TN10mRNA_11220
Organism: Heterodera glycines Gene Locus: chr6:175655-187352 Feature type: polypeptideProtein Sequence
Length: 911
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.651 | 1.71 | 0.998 | 0.53 | 0.933 | 1.295 | 0.771 | 1.262 | 1.537 | 1.068 | 0.998 | 1.485 | 1.829 | 0.865 | 0.582 | 0.91 | 0.846 | 0.915 | 1.098 | 1.033 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10577
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.781
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-22
|
0.993
|
1.000
|
0.000
|
0.000
|
0.297
|
0.206
|
0.005
|
0.465
|
0.198
|
0.233
|
0.135
|
0.034
|
0.177
|
0.483
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002282
|
1.000
|
3.000
|
Hsc_gene_5251.t1;Hsc_gene_5251.t2;Hsc_gene_5251.t3
|
— | — | — |
KAI3419387.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
MEO9871088
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
— |
IPR001079+427-575_447-572_465-568_585-736+|IPR013320+442-568+
|
SM00908+447-572+
|
PF00337+465-568+Galactoside-binding_lectin
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
908-911
|
1.000
|
1-907
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
103240.390
|
6.262
|
-3.500
|
23.052
|
14.050
|
46.981
|
53.019
|
11.965
|
11.087
|
48.518
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
350.522
|
56.073
|
33.286
|
15.905
|
27.837
|
195.397
|
85.323
|
274.139
|
2.824
|
1273.431
|
728.886
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.980
|
-1.954
|
-0.957
|
0.776
|
2.825
|
-1.185
|
0.382
|
-1.540
|
-8.901
|
— |
-5.025
|
— | — |