Hg_chrom6_TN10mRNA_11222
Organism: Heterodera glycines Gene Locus: chr6:191335-195534 Feature type: polypeptideProtein Sequence
Length: 567
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 1.312 | 0.834 | 0.608 | 1.029 | 1.673 | 0.483 | 1.764 | 1.176 | 1.144 | 0.534 | 1.452 | 1.274 | 1.323 | 1.44 | 0.907 | 0.954 | 0.989 | 1.085 | 0.622 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10579
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.825
|
0.132
|
0.031
|
0.385
|
0.101
|
0.068
|
0.031
|
0.022
|
0.111
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010184
|
1.000
|
1.000
|
Hsc_gene_5249.t3
|
Hsc_gene_5249.t1;Hsc_gene_5249.t2;Hsc_gene_5249.t3
|
— | — |
ADM16638.1 transposase [Meloidogyne javanica]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR007588+63-118+|IPR018289+259-351+
|
— |
PF04500+63-118+FLYWCH_zinc_finger_domain|PF10551+259-351+MULE_transposase_domain
|
— |
PTHR47160+223-517+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77
|
1.000
|
78-567
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
64597.420
|
7.407
|
9.000
|
24.868
|
11.640
|
49.206
|
50.794
|
14.109
|
10.758
|
48.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1460.130
|
3196.175
|
1060.207
|
1074.432
|
1193.095
|
904.038
|
1282.295
|
1024.329
|
432.902
|
2412.930
|
1564.347
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.821
|
-1.710
|
— |
0.120
|
-0.386
|
0.514
|
— |
0.466
|
— | — | — | — | — |
No JSON data available for plots.