Hg_chrom6_TN10mRNA_11225
Organism: Heterodera glycines Gene Locus: chr6:204124-212568 Feature type: polypeptideProtein Sequence
Length: 800
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.148 | 1.424 | 0.682 | 0.474 | 0.625 | 3.526 | 0.833 | 2.125 | 1.056 | 0.98 | 0.549 | 1.838 | 0.868 | 0.841 | 0.944 | 0.946 | 0.594 | 0.814 | 0.385 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10582
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
75-98
|
0.995
|
— | — |
0.000
|
— | — |
0.740
|
0.172
|
0.003
|
0.636
|
0.095
|
0.071
|
0.051
|
0.056
|
0.081
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010186
|
1.000
|
1.000
|
Hsc_gene_5246.t1
|
— | — |
Q13627.2 Dual specificity tyrosine-phosphorylation-regulated kinase 1A [Homo sapiens]
|
KAI3421232.1 Dual specificity tyrosine-phosphorylation-regulated kinase 1A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004712|GO:0005524|GO:0006468|GO:0046777
|
GO:0008150_0.928|GO:0009987_0.899|GO:0005575_0.849|GO:0065007_0.826|GO:0110165_0.826|GO:0050789_0.819|GO:0050794_0.788|GO:0003674_0.760|GO:0005622_0.750|GO:0048518_0.643|GO:0003824_0.631|GO:0140096_0.631|GO:0008152_0.624|GO:0043170_0.624|GO:0016020_0.612|GO:0016740_0.603|GO:0044237_0.591|GO:0043226_0.586|GO:0016772_0.576|GO:0044238_0.575|GO:0032502_0.573|GO:0048856_0.573|GO:0043229_0.567|GO:0016301_0.566|GO:0050896_0.565|GO:0004672_0.562|GO:0016773_0.562|GO:0048522_0.558|GO:0051716_0.547|GO:0005488_0.539|GO:0007154_0.528|GO:0023052_0.527|GO:0007165_0.506
|
IPR000719+364-683+|IPR008271+488-500+|IPR011009+352-692+|IPR017441+370-393+|IPR044131+350-687+|IPR050494+150-687+
|
SM00220+364-683+
|
PF00069+364-683+Protein_kinase_domain
|
G3DSA:3.30.200.20:FF:000087+335-442+Dual_specificity_tyrosine-phosphorylation-regulated_kinase_1A
|
PTHR24058+150-687+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-147;236-322;672-800
|
2.000
|
148-235;323-671
|
9krj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
88988.810
|
8.407
|
23.000
|
20.000
|
11.000
|
50.125
|
49.875
|
12.500
|
7.500
|
48.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1434.361
|
4169.471
|
1711.846
|
1147.075
|
814.388
|
1049.389
|
1091.621
|
1934.876
|
1555.558
|
639.159
|
1031.901
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.514
|
-1.999
|
-0.469
|
-0.526
|
0.380
|
— |
0.782
|
-0.685
|
— | — | — | — | — |
No JSON data available for plots.