Hg_chrom6_TN10mRNA_11229
Organism: Heterodera glycines Gene Locus: chr6:239254-240828 Feature type: polypeptideProtein Sequence
Length: 126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 0.738 | 1.299 | 0.0 | 1.852 | 2.035 | 0.189 | 0.397 | 1.764 | 1.073 | 1.563 | 1.867 | 0.661 | 0.153 | 1.944 | 0.567 | 1.301 | 0.722 | 0.0 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10586
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKAFQELQAQILESRDKQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.594
|
0.263
|
0.019
|
0.338
|
0.121
|
0.276
|
0.245
|
0.008
|
0.082
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010187
|
1.000
|
1.000
|
Hsc_gene_5241.t1
|
Hsc_gene_5241.t1
|
— |
Q5RAM7.1 Prefoldin subunit 1 [Pongo abelii]
|
KAI1713959.1 prefoldin subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006457|GO:0016272|GO:0051082
|
GO:0005575_0.850|GO:0110165_0.747|GO:0005622_0.731|GO:0008150_0.707|GO:0005737_0.634|GO:0009987_0.524
|
IPR002777+18-122+|IPR009053+11-125+
|
— |
PF01920+18-122+Prefoldin_subunit
|
— |
PTHR20903+11-125+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-126
|
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
14795.890
|
9.489
|
2.500
|
38.889
|
4.762
|
61.905
|
38.095
|
20.635
|
18.254
|
37.302
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
647.343
|
306.432
|
403.233
|
734.294
|
894.227
|
809.217
|
915.251
|
530.329
|
475.636
|
753.032
|
634.148
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.166
|
1.124
|
0.974
|
0.252
|
— | — |
-0.714
|
0.931
|
— | — | — | — | — |
No JSON data available for plots.