Hg_chrom6_TN10mRNA_11235
Organism: Heterodera glycines Gene Locus: chr6:262684-265314 Feature type: polypeptideProtein Sequence
Length: 126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 1.292 | 1.154 | 0.547 | 0.661 | 0.611 | 1.323 | 0.397 | 1.764 | 0.965 | 1.082 | 1.867 | 1.764 | 0.458 | 0.486 | 0.907 | 1.041 | 0.722 | 1.221 | 0.934 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10592
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.311
|
0.320
|
0.055
|
0.647
|
0.361
|
0.455
|
0.324
|
0.066
|
0.226
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010189
|
1.000
|
1.000
|
Hsc_gene_5237.t1
|
Hsc_gene_5236.t1;Hsc_gene_5237.t1
|
— |
Q21193.1 Profilin-3 [Caenorhabditis elegans]
|
AVA09728.1 putative effector protein [Heterodera avenae]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779
|
GO:0005575_0.810|GO:0110165_0.798|GO:0008150_0.752|GO:0005622_0.686|GO:0009987_0.673|GO:0005737_0.567|GO:0071840_0.555|GO:0016043_0.551|GO:0003674_0.536|GO:0043226_0.511|GO:0006996_0.504|GO:0043229_0.502
|
IPR005455+1-12_1-126_2-126_3-12_18-27_24-37_36-56_48-62_60-74_67-76_79-94_95-108_99-112_108-125+|IPR036140+2-126+|IPR048278+1-126+
|
SM00392+1-126+
|
PF00235+1-126+Profilin
|
G3DSA:3.30.450.30:FF:000030+2-126+Profilin
|
PTHR11604+1-126+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-126
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
13653.590
|
5.816
|
-0.500
|
20.635
|
11.905
|
41.270
|
58.730
|
10.317
|
10.317
|
53.968
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
black
|
2081.223
|
305.929
|
2724.023
|
900.645
|
539.357
|
2243.576
|
727.310
|
10966.372
|
852.634
|
1563.170
|
1258.655
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.926
|
1.421
|
-1.488
|
-0.771
|
2.070
|
-1.614
|
2.186
|
-3.772
|
— | — | — | — | — |
No JSON data available for plots.