Hg_chrom6_TN10mRNA_11236
Organism: Heterodera glycines Gene Locus: chr6:265911-269024 Feature type: polypeptideProtein Sequence
Length: 412
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.101 | 0.508 | 1.28 | 0.251 | 1.214 | 0.934 | 1.098 | 0.364 | 1.079 | 1.05 | 1.25 | 1.856 | 1.146 | 0.7 | 2.13 | 0.867 | 0.716 | 0.662 | 0.373 | 0.642 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10593
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RYYKRRG
|
— | — | — | — |
1-19
|
0.858
|
0.606
|
0.000
|
0.000
|
0.293
|
0.134
|
0.101
|
0.548
|
0.087
|
0.095
|
0.186
|
0.004
|
0.211
|
0.373
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010190
|
1.000
|
1.000
|
Hsc_gene_5235.t1
|
Hsc_gene_5235.t1
|
— | — |
AJR19769.1 esophageal gland-localized secretory protein 1 [Heterodera glycines]
|
MBL8300595
|
0.820
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
— |
IPR000182+103-276_178-233+|IPR016181+101-263+
|
— |
PF00583+178-233+Acetyltransferase_(GNAT)_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
297-412
|
1.000
|
1-296
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
46083.600
|
10.305
|
19.500
|
33.738
|
7.524
|
50.000
|
50.000
|
19.417
|
14.320
|
47.087
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
2084.510
|
6.278
|
4.327
|
1406.810
|
1042.966
|
80.590
|
91.800
|
51.634
|
1210.037
|
7205.550
|
4636.044
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.672
|
8.437
|
-0.463
|
-3.680
|
— | — |
0.983
|
— | — |
-2.624
|
-7.268
|
— |