Hg_chrom6_TN10mRNA_11244
Organism: Heterodera glycines Gene Locus: chr6:312465-315182 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.102 | 1.28 | 0.556 | 0.422 | 0.408 | 1.568 | 0.801 | 0.612 | 0.951 | 1.364 | 0.834 | 2.339 | 1.274 | 1.294 | 0.936 | 0.83 | 0.802 | 1.297 | 1.882 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10600
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.089
|
0.935
|
0.181
|
0.196
|
0.197
|
0.214
|
0.138
|
0.124
|
0.089
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000590
|
5.000
|
2.000
|
Hsc_gene_5232.t1;Hsc_gene_5233.t2
|
Hsc_gene_5232.t1
|
— |
Q99JR1.3 Sideroflexin-1 [Mus musculus]
|
KAI1717341.1 tricarboxylate carrier domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006811|GO:0015075|GO:0016020|GO:0055085
|
GO:0005575_0.854|GO:0110165_0.850|GO:0016020_0.784|GO:0008150_0.754|GO:0005622_0.740|GO:0005737_0.725|GO:0043226_0.698|GO:0043229_0.683|GO:0043227_0.680|GO:0043231_0.678|GO:0009987_0.658|GO:0003674_0.548|GO:0005739_0.541|GO:0051179_0.526|GO:0006810_0.518|GO:0051234_0.518
|
IPR004686+11-327+
|
— |
PF03820+11-327+Sideroflexins
|
— |
PTHR11153+11-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
36262.340
|
10.310
|
17.000
|
16.820
|
11.009
|
39.144
|
60.856
|
11.315
|
5.505
|
51.988
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
175.322
|
11.529
|
89.133
|
97.268
|
142.100
|
456.647
|
588.963
|
460.064
|
0.000
|
74.895
|
42.797
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.719
|
2.939
|
— |
0.517
|
1.698
|
0.378
|
— | — | — |
7.461
|
— | — | — |
No JSON data available for plots.