Hg_chrom6_TN10mRNA_11250
Organism: Heterodera glycines Gene Locus: chr6:338618-338908 Feature type: polypeptideProtein Sequence
Length: 71
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.819 | 0.983 | 0.0 | 0.486 | 0.939 | 1.806 | 0.671 | 0.0 | 0.626 | 1.142 | 0.854 | 2.486 | 1.565 | 1.625 | 1.15 | 1.207 | 0.924 | 1.707 | 0.0 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10606
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.357
|
0.557
|
0.145
|
0.636
|
0.156
|
0.032
|
0.056
|
0.021
|
0.092
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000590
|
5.000
|
2.000
|
Hsc_gene_5232.t1;Hsc_gene_5233.t2
|
Hsc_gene_5232.t1
|
— | — |
KIH51890.1 tricarboxylate carrier, partial [Ancylostoma duodenale]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006811|GO:0015075|GO:0016020|GO:0055085
|
GO:0005575_0.913|GO:0110165_0.902|GO:0005622_0.800|GO:0016020_0.766|GO:0005737_0.743|GO:0043226_0.732|GO:0043229_0.730|GO:0008150_0.719|GO:0043227_0.701|GO:0043231_0.688|GO:0009987_0.655|GO:0005739_0.571|GO:0051179_0.532|GO:0051234_0.525|GO:0006810_0.524|GO:0003674_0.510
|
IPR004686+5-71+
|
— |
PF03820+5-71+Sideroflexins
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-71
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
7858.190
|
10.231
|
4.000
|
16.901
|
8.451
|
42.254
|
57.746
|
11.268
|
5.634
|
52.113
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
11.265
|
0.383
|
1.581
|
2.775
|
2.483
|
2.636
|
19.882
|
25.450
|
3.084
|
26.277
|
16.337
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.719
|
— | — | — |
2.927
|
3.160
|
— | — | — | — | — | — |
No JSON data available for plots.