Hg_chrom6_TN10mRNA_11251
Organism: Heterodera glycines Gene Locus: chr6:341600-345054 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.067 | 1.28 | 0.612 | 0.422 | 0.459 | 1.568 | 0.801 | 0.612 | 0.883 | 1.405 | 0.788 | 2.159 | 1.274 | 1.294 | 0.999 | 0.83 | 0.752 | 1.39 | 1.647 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10607
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.091
|
0.929
|
0.197
|
0.200
|
0.209
|
0.219
|
0.137
|
0.130
|
0.095
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000590
|
5.000
|
2.000
|
Hsc_gene_5232.t1;Hsc_gene_5233.t2
|
Hsc_gene_5232.t1
|
— |
Q91V61.1 Sideroflexin-3 [Mus musculus]
|
KAI1717341.1 tricarboxylate carrier domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006811|GO:0015075|GO:0016020|GO:0055085
|
GO:0005575_0.857|GO:0110165_0.854|GO:0016020_0.791|GO:0008150_0.755|GO:0005622_0.746|GO:0005737_0.723|GO:0043226_0.702|GO:0043229_0.689|GO:0043227_0.682|GO:0043231_0.677|GO:0009987_0.660|GO:0003674_0.545|GO:0005739_0.539|GO:0051179_0.531|GO:0006810_0.526|GO:0051234_0.526
|
IPR004686+11-327+
|
— |
PF03820+11-327+Sideroflexins
|
— |
PTHR11153+11-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
36243.230
|
10.163
|
15.000
|
17.431
|
10.703
|
39.450
|
60.550
|
11.315
|
6.116
|
52.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
381.654
|
19.077
|
111.489
|
100.543
|
154.529
|
639.194
|
564.325
|
814.327
|
103.035
|
691.155
|
439.103
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.317
|
2.261
|
— |
0.590
|
2.062
|
— | — | — | — | — | — | — |
5.140
|
No JSON data available for plots.