Hg_chrom6_TN10mRNA_11252
Organism: Heterodera glycines Gene Locus: chr6:347210-350431 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 1.351 | 0.667 | 0.527 | 0.51 | 1.255 | 0.728 | 0.459 | 1.019 | 1.488 | 0.788 | 1.619 | 1.444 | 1.294 | 1.123 | 0.699 | 0.802 | 1.483 | 1.647 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10608
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.774
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.080
|
0.919
|
0.198
|
0.217
|
0.216
|
0.179
|
0.125
|
0.070
|
0.091
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000590
|
5.000
|
2.000
|
Hsc_gene_5232.t1;Hsc_gene_5233.t2
|
Hsc_gene_5233.t1;Hsc_gene_5233.t2
|
— |
A5A761.1 Sideroflexin-1 [Sus scrofa]
|
KAI1717341.1 tricarboxylate carrier domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006811|GO:0015075|GO:0016020|GO:0055085
|
GO:0005575_0.865|GO:0110165_0.865|GO:0016020_0.811|GO:0008150_0.746|GO:0005622_0.743|GO:0005737_0.736|GO:0043226_0.702|GO:0043229_0.696|GO:0043227_0.691|GO:0043231_0.688|GO:0009987_0.661|GO:0005739_0.545|GO:0051179_0.537|GO:0003674_0.533|GO:0006810_0.531|GO:0051234_0.531
|
IPR004686+11-327+
|
— |
PF03820+11-327+Sideroflexins
|
— |
PTHR11153+11-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
36410.580
|
10.121
|
14.500
|
18.349
|
10.703
|
38.838
|
61.162
|
11.621
|
6.728
|
52.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
587.163
|
3.536
|
12.364
|
23.212
|
64.684
|
140.716
|
74.882
|
130.078
|
42.665
|
2368.286
|
1371.591
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.577
|
2.581
|
1.018
|
1.448
|
1.137
|
-0.896
|
— | — |
-5.919
|
— |
-4.713
|
— | — |
No JSON data available for plots.