Hg_chrom6_TN10mRNA_11261
Organism: Heterodera glycines Gene Locus: chr6:421778-425765 Feature type: polypeptideProtein Sequence
Length: 502
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.343 | 0.978 | 0.343 | 1.228 | 1.073 | 0.64 | 1.096 | 1.638 | 1.373 | 0.875 | 1.64 | 1.273 | 0.881 | 1.098 | 0.854 | 0.686 | 1.056 | 0.919 | 0.937 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10617
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_8166
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-19
|
0.938
|
0.998
|
0.000
|
0.000
|
0.452
|
0.234
|
0.095
|
0.709
|
0.145
|
0.165
|
0.147
|
0.031
|
0.129
|
0.259
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004284
|
2.000
|
1.000
|
Hsc_gene_8166.t1
|
Hsc_gene_8164.t1;Hsc_gene_8166.t1
|
— |
Q54E83.1 Glutathione synthetase [Dictyostelium discoideum]
|
KAI1726783.1 eukaryotic glutathione synthase, ATP binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.945|GO:0003674_0.863|GO:0008152_0.782|GO:0009987_0.762|GO:0005575_0.707|GO:0110165_0.700|GO:0050896_0.670|GO:0044237_0.642|GO:0009058_0.637|GO:0003824_0.636|GO:0044249_0.614|GO:0006790_0.557|GO:0006518_0.553|GO:0006575_0.553|GO:0006749_0.553|GO:0006750_0.553|GO:0019184_0.553|GO:0042398_0.553|GO:0043043_0.553|GO:0043603_0.553|GO:0043604_0.553|GO:0044272_0.553|GO:0016874_0.541|GO:0005622_0.540|GO:0004363_0.536|GO:0016879_0.536|GO:0016881_0.536|GO:1904091_0.536
|
IPR004887+225-323+|IPR005615+17-502_30-501_32-501+|IPR014042+85-361+|IPR014049+32-443+|IPR014709+362-429+|IPR016185+225-323+|IPR037013+203-325+
|
— |
PF03199+225-323+Eukaryotic_glutathione_synthase|PF03917+32-501+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+30-501+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-502
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
57093.550
|
6.152
|
-2.500
|
26.096
|
11.155
|
46.215
|
53.785
|
13.347
|
12.749
|
45.817
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1018.153
|
1.544
|
4.702
|
1369.794
|
654.956
|
117.696
|
103.023
|
44.152
|
1326.144
|
2598.861
|
2053.411
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
9.669
|
8.304
|
-1.095
|
-2.463
|
— |
-1.530
|
1.367
|
— | — | — | — | — |