Hg_chrom6_TN10mRNA_11263
Organism: Heterodera glycines Gene Locus: chr6:445728-451417 Feature type: polypeptideProtein Sequence
Length: 743
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 0.782 | 0.759 | 0.186 | 1.166 | 0.828 | 0.673 | 0.942 | 1.137 | 1.491 | 1.142 | 2.138 | 1.458 | 1.242 | 1.401 | 1.211 | 0.706 | 0.856 | 0.932 | 0.673 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10619
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
extracellular
|
nucleus
|
KKLRVMPESYDKLKRT,RRVPRRVEDGFEQLLKTRK,RRVEDGFEQLLKTRKEREK,KVEKGRKRTESARLIRYGKKGRRRVPRR
|
— | — | — | — |
1-37
|
— |
0.849
|
— |
3.000
|
0.133
|
0.073
|
0.032
|
0.034
|
0.359
|
0.135
|
0.291
|
0.030
|
0.263
|
0.912
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003762
|
2.000
|
1.000
|
Hsc_gene_8161.t1
|
Hsc_gene_8161.t1;Hsc_gene_8161.t2;Hsc_gene_8161.t3
|
— | — |
KAI1711462.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006954+342-552+
|
— |
PF04870+342-552+Moulting_cycle
|
— |
PTHR21523+268-743+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
155-285
|
2.000
|
1-154;286-743
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
84297.810
|
10.138
|
31.000
|
27.456
|
10.633
|
46.837
|
53.163
|
16.285
|
11.171
|
44.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
328.040
|
27.282
|
15.646
|
8.369
|
679.481
|
1469.839
|
63.111
|
77.237
|
331.604
|
308.608
|
318.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.037
|
-1.843
|
-0.790
|
6.310
|
1.129
|
-4.531
|
-4.373
|
— | — | — | — | — | — |