Hg_chrom6_TN10mRNA_11265
Organism: Heterodera glycines Gene Locus: chr6:456210-458119 Feature type: polypeptideProtein Sequence
Length: 242
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.402 | 0.48 | 0.225 | 0.997 | 0.482 | 0.954 | 0.197 | 1.24 | 1.01 | 0.503 | 0.438 | 0.243 | 1.033 | 1.987 | 0.337 | 3.011 | 0.948 | 1.064 | 0.636 | 0.122 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10621
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— |
14-35
|
0.975
|
1-35
|
0.994
|
1-21
|
0.977
|
0.999
|
0.000
|
0.000
|
0.669
|
0.197
|
0.164
|
0.462
|
0.228
|
0.162
|
0.104
|
0.139
|
0.179
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004286
|
1.000
|
2.000
|
Hsc_gene_8162.t1;Hsc_gene_8162.t2
|
— | — |
Q8L649.1 E3 ubiquitin-protein ligase BIG BROTHER [Arabidopsis thaliana]
|
XP_019451894.1 PREDICTED: RING-H2 finger protein ATL32-like [Lupinus angustifolius]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.893|GO:0005575_0.764|GO:0110165_0.759|GO:0003674_0.709|GO:0009987_0.659|GO:0016020_0.640|GO:0005622_0.635|GO:0065007_0.623|GO:0050789_0.616|GO:0050794_0.604|GO:0043226_0.573|GO:0008152_0.563|GO:0043170_0.563|GO:0043229_0.561|GO:0043227_0.542|GO:0003824_0.538|GO:0016740_0.538|GO:0016746_0.538|GO:0140096_0.536|GO:0004842_0.534|GO:0016755_0.534|GO:0019787_0.534|GO:0043231_0.527|GO:0044238_0.519
|
IPR001841+197-238_198-238+|IPR011016+197-239+|IPR013083+159-241+
|
SM00184+198-238+|SM00744+197-239+
|
PF13639+197-238+Ring_finger_domain
|
— |
PTHR45676+17-238+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
7r71_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
24063.920
|
7.631
|
4.000
|
11.157
|
7.438
|
43.802
|
56.198
|
7.025
|
4.132
|
72.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
179.671
|
3.974
|
1.558
|
723.520
|
248.438
|
24.363
|
19.327
|
23.012
|
230.814
|
221.376
|
225.421
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.584
|
7.370
|
8.991
|
-1.573
|
-3.336
|
— | — | — | — | — | — | — | — |