Hg_chrom6_TN10mRNA_11266
Organism: Heterodera glycines Gene Locus: chr6:459113-463399 Feature type: polypeptideProtein Sequence
Length: 896
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.895 | 1.635 | 1.238 | 0.423 | 1.339 | 2.003 | 1.515 | 2.176 | 0.843 | 0.241 | 1.319 | 1.576 | 0.279 | 0.901 | 0.866 | 0.686 | 1.281 | 0.541 | 0.601 | 0.131 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10622
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRKKR,QKRKK,GPRVGKKRNGTARVKKIKKPGVARHRIGRKRKGTAGKSPK
|
— | — | — | — |
1-26
|
0.997
|
1.000
|
0.000
|
0.000
|
0.297
|
0.116
|
0.012
|
0.349
|
0.091
|
0.028
|
0.045
|
0.017
|
0.227
|
0.812
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001347
|
1.000
|
4.000
|
Hsc_gene_8159.t1;Hsc_gene_8159.t2;Hsc_gene_8159.t3;Hsc_gene_8159.t4
|
— | — | — | — |
GEX95250
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
129-896
|
1.000
|
1-128
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
96476.750
|
6.615
|
2.500
|
32.143
|
6.585
|
59.598
|
40.402
|
17.299
|
14.844
|
56.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
skyblue
|
808.577
|
14.687
|
20.332
|
42.973
|
47.310
|
1623.416
|
5548.361
|
527.730
|
240.006
|
423.217
|
344.698
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.412
|
1.190
|
— |
5.112
|
1.785
|
-1.740
|
3.544
|
— | — |
-3.037
|
-6.217
|
— |