Hg_chrom6_TN10mRNA_11284
Organism: Heterodera glycines Gene Locus: chr6:566833-567804 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.21 | 1.257 | 1.638 | 0.311 | 1.201 | 1.848 | 0.751 | 0.901 | 1.602 | 0.974 | 0.956 | 1.59 | 0.751 | 0.693 | 1.839 | 0.772 | 1.034 | 0.819 | 2.079 | 0.53 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10639
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.556
|
0.360
|
0.119
|
0.582
|
0.058
|
0.175
|
0.054
|
0.021
|
0.186
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010204
|
1.000
|
1.000
|
Hsc_gene_8139.t1
|
Hsc_gene_8139.t1
|
— |
P34328.1 Heat shock protein Hsp-12.2 [Caenorhabditis elegans]
|
KAF7634510.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.846|GO:0110165_0.837|GO:0008150_0.799|GO:0005622_0.784|GO:0005737_0.684|GO:0009987_0.625|GO:0003674_0.621|GO:0065007_0.567|GO:0050789_0.558|GO:0005488_0.557|GO:0050896_0.556|GO:0043226_0.547|GO:0043229_0.541|GO:0016020_0.517|GO:0005515_0.508|GO:0050794_0.506
|
IPR001436+9-110_29-49_51-64_66-85_88-109+|IPR002068+16-111_30-110+|IPR008978+15-109_19-111+
|
— |
PF00011+30-110+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+9-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
13033.650
|
6.471
|
0.000
|
33.333
|
9.009
|
57.658
|
42.342
|
17.117
|
16.216
|
44.144
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2137.131
|
20306.077
|
3569.474
|
202.390
|
32.088
|
43.101
|
4.463
|
257.106
|
107.140
|
114.079
|
111.105
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.741
|
-6.784
|
-4.029
|
-2.693
|
— |
-3.257
|
2.473
|
-5.704
|
— | — | — | — | — |
No JSON data available for plots.