Hg_chrom6_TN10mRNA_11285
Organism: Heterodera glycines Gene Locus: chr6:569089-569892 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.242 | 0.903 | 0.706 | 2.678 | 0.971 | 0.747 | 1.04 | 0.971 | 0.216 | 0.918 | 1.912 | 2.284 | 1.618 | 0.747 | 0.793 | 0.416 | 0.796 | 0.736 | 0.747 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10640
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KLKEKGLNVKKFKKAKK
|
— | — | — | — | — | — |
0.001
|
— | — |
0.389
|
0.121
|
0.017
|
0.747
|
0.069
|
0.189
|
0.180
|
0.003
|
0.257
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010205
|
1.000
|
1.000
|
Hsc_gene_8138.t1
|
Hsc_gene_8138.t1
|
— | — |
KAF7635902.1 LIM zinc-binding domain-containing protein [Meloidogyne graminicola]
|
KAI3713396
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.908|GO:0009987_0.848|GO:0071840_0.721|GO:0016043_0.714|GO:0003674_0.672|GO:0005488_0.652|GO:0005575_0.646|GO:0110165_0.639|GO:0005515_0.599|GO:0005622_0.572|GO:0043226_0.525|GO:0043229_0.504
|
IPR001781+12-79_14-54+
|
— |
PF00412+14-54+LIM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-103
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
11419.350
|
8.896
|
8.000
|
28.155
|
11.650
|
42.718
|
57.282
|
18.447
|
9.709
|
51.456
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
639.857
|
1613.870
|
553.896
|
81.104
|
61.684
|
831.835
|
32.062
|
3492.073
|
48.188
|
263.288
|
171.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.774
|
-4.452
|
-2.662
|
-0.429
|
3.769
|
-4.687
|
1.966
|
-6.624
|
— | — | — | — | — |
No JSON data available for plots.