Hg_chrom6_TN10mRNA_11291
Organism: Heterodera glycines Gene Locus: chr6:589442-593258 Feature type: polypeptideProtein Sequence
Length: 358
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.812 | 1.949 | 0.66 | 0.867 | 0.745 | 1.647 | 0.698 | 1.117 | 1.552 | 1.51 | 1.143 | 1.479 | 1.474 | 0.376 | 1.083 | 0.758 | 0.824 | 0.635 | 1.074 | 0.822 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10646
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KEKFRRRRKKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.308
|
0.195
|
0.196
|
0.384
|
0.588
|
0.338
|
0.299
|
0.165
|
0.174
|
0.244
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010210
|
1.000
|
1.000
|
Hsc_gene_8132.t1
|
Hsc_gene_8132.t1
|
— |
Q8RX29.1 RING-H2 finger protein ATL70 [Arabidopsis thaliana]
|
XP_019458452.1 PREDICTED: RING-H2 finger protein ATL40-like isoform X2 [Lupinus angustifolius]
|
CAK8536357
|
0.540
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.874|GO:0003674_0.702|GO:0005575_0.562|GO:0110165_0.562|GO:0003824_0.533|GO:0009987_0.524|GO:0140096_0.503
|
IPR001841+286-330_287-329_287-330+|IPR013083+250-335+
|
SM00184+287-329+|SM01197+283-335+
|
PF13639+286-330+Ring_finger_domain
|
— |
PTHR45676+197-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-358
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
40915.300
|
9.933
|
21.000
|
23.184
|
11.732
|
48.324
|
51.676
|
15.084
|
8.101
|
43.855
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
179.406
|
0.313
|
34.329
|
69.425
|
22.008
|
2.000
|
1.417
|
1.095
|
411.535
|
427.279
|
420.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.576
|
7.687
|
1.126
|
-1.687
|
-3.444
|
— | — | — | — |
-2.429
|
-4.099
|
— | — |
No JSON data available for plots.