Hg_chrom6_TN10mRNA_11292
Organism: Heterodera glycines Gene Locus: chr6:593751-598663 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 1.78 | 0.603 | 1.232 | 1.403 | 1.243 | 0.698 | 1.276 | 1.644 | 1.241 | 1.082 | 2.101 | 1.63 | 0.491 | 1.041 | 0.765 | 0.836 | 0.502 | 1.177 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10647
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RRRRRKKRR
|
— | — | — | — | — | — |
0.007
|
— | — |
0.329
|
0.173
|
0.166
|
0.387
|
0.634
|
0.228
|
0.415
|
0.124
|
0.198
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010211
|
1.000
|
1.000
|
Hsc_gene_8131.t1
|
— | — |
Q9M0R7.1 RING-H2 finger protein ATL39 [Arabidopsis thaliana]
|
PWZ07573.1 RING-H2 finger protein ATL7 [Zea mays]
|
KAF8754843
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.926|GO:0003674_0.682|GO:0009987_0.581|GO:0005575_0.580|GO:0110165_0.580|GO:0008152_0.577|GO:0044238_0.543|GO:0043170_0.515|GO:0016020_0.504
|
IPR001841+318-362_319-361_319-362+|IPR011016+318-362+|IPR013083+286-367+
|
SM00184+319-361+|SM00744+318-362+
|
PF13639+318-362+Ring_finger_domain
|
— |
PTHR45676+244-367+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-392
|
7bvw_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
45146.920
|
7.704
|
7.000
|
26.531
|
11.990
|
49.490
|
50.510
|
14.796
|
11.735
|
42.347
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkmagenta
|
206.070
|
0.000
|
55.207
|
169.838
|
16.421
|
1.860
|
1.616
|
1.386
|
313.335
|
574.181
|
462.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10.122
|
11.837
|
1.730
|
-3.402
|
-3.122
|
— | — | — | — | — |
-4.731
|
— | — |
No JSON data available for plots.