Hg_chrom6_TN10mRNA_11295
Organism: Heterodera glycines Gene Locus: chr6:607152-609580 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.297 | 0.769 | 0.601 | 0.855 | 1.24 | 0.848 | 0.984 | 2.479 | 1.377 | 1.173 | 0.939 | 2.674 | 0.459 | 0.636 | 0.843 | 0.531 | 0.948 | 1.002 | 0.954 | 1.094 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10649
|
— | — |
2.333
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
4.000
|
2.000
|
3.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.848
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.518
|
0.230
|
0.010
|
0.580
|
0.177
|
0.112
|
0.080
|
0.044
|
0.181
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010213
|
1.000
|
1.000
|
Hsc_gene_21878.t1
|
Hsc_gene_21878.t1
|
— |
Q20952.1 Adducin-related protein 2 [Caenorhabditis elegans]
|
KAH7709164.1 class II aldolase/adducin family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.920|GO:0005575_0.799|GO:0110165_0.799|GO:0009987_0.794|GO:0003674_0.687|GO:0071840_0.655|GO:0016043_0.647|GO:0006996_0.625|GO:0007010_0.616|GO:0005622_0.612|GO:0016020_0.584|GO:0043226_0.568|GO:0032501_0.545
|
IPR001303+1-147_4-147+|IPR036409+1-225_4-154+|IPR051017+4-241+
|
SM01007+1-147+
|
PF00596+4-147+Class_II_Aldolase_and_Adducin_N-terminal_domain
|
— |
PTHR10672+4-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
26704.870
|
7.277
|
5.000
|
26.033
|
11.570
|
42.149
|
57.851
|
15.289
|
10.744
|
47.934
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
609.211
|
679.049
|
304.301
|
66.541
|
115.943
|
482.659
|
75.653
|
1423.939
|
73.711
|
1429.483
|
848.438
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.387
|
-3.489
|
-2.085
|
0.771
|
2.072
|
-2.663
|
1.456
|
-4.090
|
-4.440
|
— | — | — | — |
No JSON data available for plots.