SCN Proteipedia

Hg_chrom6_TN10mRNA_11296

Organism: Heterodera glycines Gene Locus: chr6:611400-612466 Feature type: polypeptide

Protein Sequence

Length: 206

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.847	1.58	0.706	0.167	2.184	0.498	0.52	0.971	1.834	1.378	1.177	1.999	0.944	0.84	1.189	0.763	0.557	0.809	0.747	0.571	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_10650	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.425	0.322	0.247	0.601	0.164	0.077	0.080	0.012	0.149	0.173

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003226	2.000	1.000	Hsc_gene_6080.t1	—	—	P35668.1 Glutathione synthetase [Xenopus laevis]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016874	GO:0008150_0.921\|GO:0003674_0.827\|GO:0008152_0.793\|GO:0009987_0.742\|GO:0005575_0.718\|GO:0110165_0.708\|GO:0050896_0.665\|GO:0044237_0.646\|GO:0009058_0.638\|GO:0044249_0.619\|GO:0003824_0.613\|GO:0005622_0.594\|GO:0006790_0.559\|GO:0005737_0.554\|GO:0006518_0.554\|GO:0006575_0.554\|GO:0006749_0.554\|GO:0006750_0.554\|GO:0019184_0.554\|GO:0042398_0.554\|GO:0043043_0.554\|GO:0043603_0.554\|GO:0043604_0.554\|GO:0044272_0.554\|GO:0016874_0.543\|GO:0004363_0.537\|GO:0016879_0.537\|GO:0016881_0.537\|GO:1904091_0.537\|GO:0042221_0.505	IPR005615+10-204_33-203+\|IPR014042+33-68+\|IPR014049+148-165+\|IPR014709+69-147+\|IPR037013+8-32+	—	PF03917+33-203+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+10-204+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-206	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.593	23595.080	5.071	-5.000	32.524	8.252	50.000	50.000	15.534	16.990	41.262

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	grey	12.333	9.192	2.038	4.355	1.490	3.884	3.043	0.827	4.146	41.534	25.511

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.420	-1.215	—	-1.579	—	—	-2.339	2.022	—	—	—	—	—

No JSON data available for plots.

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