Hg_chrom6_TN10mRNA_11303
Organism: Heterodera glycines Gene Locus: chr6:641874-646648 Feature type: polypeptideProtein Sequence
Length: 331
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.159 | 1.686 | 0.879 | 0.313 | 0.352 | 1.085 | 1.043 | 1.208 | 1.007 | 1.021 | 1.144 | 1.422 | 1.259 | 0.639 | 0.308 | 1.424 | 0.644 | 0.961 | 3.021 | 1.155 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10657
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
9-Not_Clustered
|
0.551
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus|extracellular
|
nucleus
|
KRVK
|
— | — | — | — |
1-22
|
0.983
|
1.000
|
0.000
|
0.000
|
0.542
|
0.290
|
0.135
|
0.497
|
0.121
|
0.250
|
0.256
|
0.072
|
0.235
|
0.651
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010214
|
1.000
|
1.000
|
Hsc_gene_8119.t1
|
Hsc_gene_8119.t1
|
— |
Q0CTQ7.1 Probable arabinogalactan endo-beta-1,4-galactanase A [Aspergillus terreus NIH2624]
|
ACY02855.1 ararbinogalactan endo-1,4-beta-galactosidase 1 [Heterodera schachtii]
|
WP_099803554
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015926
|
GO:0008150_0.805|GO:0003674_0.735|GO:0008152_0.659|GO:0003824_0.658|GO:0043170_0.598|GO:0016787_0.587|GO:0009056_0.585|GO:0009057_0.561|GO:0016798_0.552|GO:0004553_0.550|GO:0005575_0.542|GO:0110165_0.533
|
IPR011683+5-329_25-326+|IPR017853+12-330+
|
— |
PF07745+25-326+Glycosyl_hydrolase_family_53
|
— |
PTHR34983+5-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-331
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
36351.140
|
9.433
|
11.000
|
18.429
|
14.804
|
43.807
|
56.193
|
11.480
|
6.949
|
55.287
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
5519.234
|
5.378
|
401.341
|
28.156
|
4.776
|
20.778
|
2.635
|
54.172
|
31356.842
|
435.054
|
13687.249
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.991
|
2.254
|
-3.721
|
-2.589
|
2.134
|
-2.970
|
1.271
|
-4.217
|
6.052
|
-9.971
|
-6.356
|
-3.611
|
— |