SCN Proteipedia

Hg_chrom6_TN10mRNA_11307

Organism: Heterodera glycines Gene Locus: chr6:669996-671910 Feature type: polypeptide

Protein Sequence

Length: 193

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.145	1.205	0.471	0.536	0.777	2.391	0.555	1.295	1.267	0.84	1.021	1.524	1.151	0.897	1.903	1.332	0.595	0.628	0.797	0.61	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_10661	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKFSIKRVKDTQRKKRRPA	—	—	44-67	0.999	—	—	0.000	—	—	0.827	0.124	0.012	0.349	0.036	0.030	0.046	0.022	0.041	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002152	3.000	1.000	Hsc_gene_18549.t1	Hsc_gene_18549.t1	—	P23759.4 Paired box protein Pax-7 [Homo sapiens]	XP_064423796.1 paired box protein Pax-7 isoform X4 [Latimeria chalumnae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.927\|GO:0009987_0.818\|GO:0005575_0.764\|GO:0032502_0.755\|GO:0048856_0.755\|GO:0110165_0.753\|GO:0065007_0.742\|GO:0050789_0.731\|GO:0050794_0.720\|GO:0005622_0.715\|GO:0032501_0.708\|GO:0043226_0.683\|GO:0043229_0.683\|GO:0003674_0.652\|GO:0005488_0.646\|GO:0007275_0.638\|GO:0016020_0.609\|GO:0097159_0.589\|GO:0003676_0.578\|GO:0008152_0.575\|GO:0009058_0.575\|GO:0009059_0.575\|GO:0043170_0.575\|GO:0044237_0.575\|GO:0044249_0.575\|GO:0048513_0.572\|GO:0010467_0.566\|GO:0019222_0.554\|GO:0031323_0.554\|GO:0043227_0.554\|GO:0006139_0.553\|GO:0044238_0.553\|GO:0009653_0.552\|GO:0080090_0.550\|GO:0034654_0.547\|GO:0090304_0.543\|GO:0141187_0.543\|GO:0060255_0.542\|GO:0016070_0.541\|GO:0032774_0.541\|GO:0009889_0.534\|GO:0031326_0.534\|GO:0010556_0.531\|GO:0043231_0.531\|GO:0048731_0.527\|GO:0010468_0.526\|GO:0003677_0.519\|GO:0019219_0.511\|GO:0003690_0.510\|GO:0051252_0.509\|GO:0030154_0.507\|GO:0048869_0.507\|GO:0006351_0.505	IPR001356+115-180_117-184_118-179_118-181+\|IPR001523+1-123_10-112_16-55_24-41_42-59+\|IPR009057+17-48_114-185+\|IPR017970+155-178+\|IPR036388+11-49+\|IPR043565+64-183+	SM00351+10-112+\|SM00389+117-184+	PF00046+118-179+Homeodomain\|PF00292+16-55+'Paired_box'_domain	—	PTHR45636+64-183+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	50-125	2.000	1-49;126-193	1fjl_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.560	21943.040	11.102	19.500	25.907	9.845	53.368	46.632	18.653	7.254	45.596

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	blue	36.634	2.466	2.624	1.865	7.970	14.288	5.267	2.504	4.146	143.294	83.659

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	2.060	—	-1.431	-2.627	—	—	—	—	—	—

No JSON data available for plots.

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