Hg_chrom6_TN10mRNA_11313
Organism: Heterodera glycines Gene Locus: chr6:721525-722452 Feature type: polypeptideProtein Sequence
Length: 247
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.377 | 1.883 | 0.883 | 0.14 | 1.552 | 1.453 | 0.578 | 0.607 | 2.249 | 0.875 | 2.515 | 1.667 | 1.574 | 0.234 | 0.826 | 0.752 | 0.664 | 0.184 | 1.557 | 0.834 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10667
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-Not_Clustered
|
0.891
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKLGISRQKIYKWKKE,KKKEFIERIDEIKRMSK,EGIKKKGKYSAKIWNKFELKIAKKLGISRQKIYKWK
|
— | — | — | — |
1-19
|
0.861
|
0.604
|
0.000
|
0.000
|
0.667
|
0.214
|
0.018
|
0.506
|
0.103
|
0.066
|
0.067
|
0.023
|
0.122
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000071
|
17.000
|
1.000
|
Hsc_gene_24717.t1
|
— | — | — |
KAI3411791.1 hypothetical protein GPALN_001856, partial [Globodera pallida]
|
HJO47896
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0004803|GO:0006313
|
— |
IPR002514+149-201+
|
— |
PF01527+149-201+Transposase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-247
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.563
|
29452.940
|
10.291
|
17.500
|
36.032
|
11.741
|
59.109
|
40.891
|
21.862
|
14.170
|
33.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
99.075
|
0.306
|
12.169
|
20.737
|
4.106
|
0.385
|
0.000
|
0.548
|
295.273
|
197.654
|
239.490
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.089
|
5.945
|
0.877
|
-2.365
|
-3.419
|
— | — | — | — |
-3.713
|
-5.499
|
— | — |