Hg_chrom6_TN10mRNA_11314
Organism: Heterodera glycines Gene Locus: chr6:727254-729149 Feature type: polypeptideProtein Sequence
Length: 378
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 1.107 | 1.058 | 0.547 | 1.279 | 0.746 | 0.63 | 1.852 | 1.646 | 1.144 | 0.882 | 1.245 | 1.102 | 0.661 | 1.35 | 0.907 | 1.128 | 1.243 | 0.407 | 0.156 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10668
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.456
|
0.245
|
0.009
|
0.429
|
0.173
|
0.134
|
0.091
|
0.042
|
0.147
|
0.277
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010217
|
2.000
|
0.000
|
0.000
|
— | — |
O80983.2 ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Arabidopsis thaliana]
|
OTF75400.1 ATP-dependent zinc metalloprotease YME1-like protein [Euroglyphus maynei]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.844|GO:0110165_0.838|GO:0008150_0.816|GO:0005622_0.741|GO:0016020_0.695|GO:0005737_0.684|GO:0043226_0.651|GO:0043229_0.639|GO:0009987_0.621|GO:0043227_0.589|GO:0043231_0.571|GO:0008152_0.536|GO:0003674_0.517
|
IPR003959+125-223+|IPR027417+61-244_86-312+
|
— |
PF00004+125-223+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR23076+71-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56
|
1.000
|
57-378
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
42094.120
|
6.861
|
3.000
|
29.630
|
8.730
|
50.529
|
49.471
|
16.138
|
13.492
|
50.265
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
22.225
|
0.000
|
38.970
|
15.805
|
4.461
|
0.735
|
1.011
|
3.054
|
0.514
|
72.834
|
41.840
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9.617
|
8.410
|
-1.189
|
-1.858
|
— | — | — | — | — |
4.355
|
— | — | — |
No JSON data available for plots.