Hg_chrom6_TN10mRNA_11315
Organism: Heterodera glycines Gene Locus: chr6:727254-729920 Feature type: polypeptideProtein Sequence
Length: 359
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.004 | 1.036 | 0.962 | 0.672 | 1.068 | 0.857 | 0.597 | 1.95 | 1.609 | 1.167 | 0.929 | 1.311 | 1.238 | 0.696 | 1.251 | 0.995 | 1.096 | 1.224 | 0.429 | 0.082 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10668
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.384
|
0.232
|
0.006
|
0.510
|
0.269
|
0.220
|
0.113
|
0.042
|
0.160
|
0.303
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010217
|
2.000
|
0.000
|
0.000
|
— | — |
O80983.2 ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Arabidopsis thaliana]
|
MDX1568091.1 ATP-dependent zinc metalloprotease FtsH [Longimicrobiales bacterium]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.837|GO:0110165_0.829|GO:0008150_0.805|GO:0005622_0.735|GO:0016020_0.706|GO:0043226_0.663|GO:0005737_0.655|GO:0043229_0.652|GO:0043227_0.600|GO:0009987_0.594|GO:0043231_0.584|GO:0008152_0.551|GO:0003674_0.542
|
IPR003959+117-215+|IPR027417+53-236_76-279+
|
— |
PF00004+117-215+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR23076+64-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
39796.760
|
7.988
|
9.000
|
27.855
|
9.192
|
49.304
|
50.696
|
16.156
|
11.699
|
50.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
22.225
|
0.000
|
38.970
|
15.805
|
4.461
|
0.735
|
1.011
|
3.054
|
0.514
|
72.834
|
41.840
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9.617
|
8.410
|
-1.189
|
-1.858
|
— | — | — | — | — |
4.355
|
— | — | — |
No JSON data available for plots.