Hg_chrom6_TN10mRNA_11326
Organism: Heterodera glycines Gene Locus: chr6:773762-776111 Feature type: polypeptideProtein Sequence
Length: 199
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.526 | 1.402 | 1.188 | 0.347 | 1.089 | 1.16 | 0.838 | 3.015 | 1.228 | 1.426 | 0.761 | 1.182 | 2.233 | 0.87 | 1.231 | 0.503 | 0.577 | 0.838 | 1.546 | 0.443 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-22
|
— |
0.715
|
— |
0.000
|
0.457
|
0.350
|
0.282
|
0.203
|
0.266
|
0.080
|
0.081
|
0.131
|
0.064
|
0.877
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010220
|
1.000
|
1.000
|
Hsc_gene_22647.t1
|
Hsc_gene_22647.t1
|
— |
Q02853.2 Stromelysin-3 [Mus musculus]
|
KHN84750.1 50 kDa hatching enzyme [Toxocara canis]
|
No
|
-0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.849|GO:0003674_0.743|GO:0005575_0.669|GO:0110165_0.669|GO:0009987_0.636|GO:0008152_0.629|GO:0003824_0.580|GO:0044238_0.518|GO:0043170_0.506
|
IPR001818+43-198+|IPR006026+40-199+|IPR021190+70-85_96-124_152-177_186-199+|IPR024079+20-199+|IPR033739+43-198+
|
SM00235+40-199+
|
PF00413+43-198+Matrixin
|
— |
PTHR10201+32-198+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-199
|
1l6j_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
23178.360
|
6.776
|
2.000
|
30.151
|
17.588
|
47.739
|
52.261
|
17.085
|
13.065
|
42.211
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
533.041
|
28.058
|
2.510
|
6.510
|
43.541
|
362.952
|
5.867
|
52.562
|
22.947
|
2126.594
|
1225.031
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.722
|
-2.245
|
1.489
|
2.711
|
3.075
|
-5.940
|
-2.908
|
-3.021
|
-5.049
|
— |
-5.078
|
— | — |