SCN Proteipedia

Hg_chrom6_TN10mRNA_11328

Organism: Heterodera glycines Gene Locus: chr6:803827-817150 Feature type: polypeptide

Protein Sequence

Length: 1,435

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.653	0.908	0.621	0.577	0.639	2.055	0.888	2.091	0.852	0.989	0.296	0.902	0.619	1.032	1.124	1.553	1.051	0.845	0.429	0.635	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_10681	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.583

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	5-29	0.999	—	—	—	—	0.000	—	—	0.404	0.187	0.017	0.718	0.131	0.209	0.149	0.043	0.291	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004291	1.000	2.000	Hsc_gene_22643.t1;Hsc_gene_22643.t2	—	—	Q21017.2 Serine/threonine-protein kinase kin-29 [Caenorhabditis elegans]	KAI1732218.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	-0.290

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.941\|GO:0009987_0.896\|GO:0005575_0.872\|GO:0110165_0.869\|GO:0003674_0.852\|GO:0065007_0.852\|GO:0050789_0.846\|GO:0050794_0.841\|GO:0003824_0.837\|GO:0140096_0.837\|GO:0016301_0.836\|GO:0016740_0.836\|GO:0016772_0.836\|GO:0004672_0.833\|GO:0016773_0.833\|GO:0004674_0.802\|GO:0005488_0.738\|GO:0005622_0.734\|GO:0050896_0.722\|GO:0008152_0.698\|GO:0051716_0.688\|GO:0043170_0.678\|GO:0044237_0.678\|GO:0023052_0.663\|GO:0044238_0.663\|GO:0007154_0.661\|GO:0007165_0.620\|GO:0006793_0.592\|GO:0006796_0.592\|GO:0019538_0.590\|GO:0016020_0.587\|GO:0032501_0.580\|GO:0005737_0.577\|GO:0036211_0.571\|GO:0043412_0.571\|GO:0006468_0.569\|GO:0016310_0.569\|GO:0005515_0.567\|GO:0032502_0.552\|GO:0048856_0.549\|GO:0071944_0.520\|GO:0043226_0.519	IPR000719+123-374+\|IPR008271+241-253+\|IPR011009+120-375+\|IPR017441+129-152+	SM00220+123-374+	PF00069+123-374+Protein_kinase_domain	G3DSA:1.10.510.10:FF:001222+117-376+Serine/threonine-protein_kinase_ppk25\|G3DSA:3.30.200.20:FF:000003+106-203+Non-specific_serine/threonine_protein_kinase	PTHR24346+87-875+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	558-726;857-1308	3.000	1-557;727-856;1309-1435	8r4v_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.853	151663.680	7.870	33.000	18.885	9.129	48.084	51.916	11.638	7.247	58.885

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	1707.525	2502.679	1825.709	1732.779	906.176	2099.800	1145.779	1405.651	2454.114	1272.872	1779.119

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.684	-0.668	—	-0.967	1.227	-0.864	-0.684	—	—	—	—	—	—

No JSON data available for plots.

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