Hg_chrom6_TN10mRNA_11331
Organism: Heterodera glycines Gene Locus: chr6:833632-843860 Feature type: polypeptideProtein Sequence
Length: 841
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.41 | 0.608 | 0.994 | 0.205 | 2.239 | 1.159 | 0.453 | 0.773 | 0.687 | 1.253 | 1.567 | 1.329 | 1.057 | 0.526 | 1.116 | 0.578 | 1.053 | 0.973 | 0.366 | 0.455 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10684
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KRRELVAPLRKLKSRKRQKEE
|
— | — | — | — |
1-24
|
0.954
|
0.999
|
0.000
|
0.000
|
0.370
|
0.140
|
0.014
|
0.391
|
0.723
|
0.070
|
0.127
|
0.013
|
0.205
|
0.474
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010223
|
1.000
|
1.000
|
Hsc_gene_22641.t1
|
Hsc_gene_22641.t1
|
— |
Q0VA61.2 Hypoxia up-regulated protein 1 [Xenopus tropicalis]
|
KAI1725554.1 hsp70 protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0140662
|
GO:0008150_0.868|GO:0009987_0.840|GO:0005575_0.822|GO:0110165_0.822|GO:0005622_0.731|GO:0016020_0.707|GO:0005737_0.659|GO:0043226_0.651|GO:0043229_0.612|GO:0005886_0.585|GO:0071944_0.585|GO:0043227_0.554|GO:0051179_0.512
|
IPR013126+29-236_273-450+|IPR029048+490-601_518-598+|IPR043129+27-207_216-438+|IPR050451+484-674+
|
— |
PF00012+29-236_273-450+Hsp70_protein
|
G3DSA:3.90.640.10:FF:000004+284-369+Heat_shock_70_kDa_protein_4
|
PTHR45639+484-674+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
691-841
|
1.000
|
1-690
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
94835.600
|
5.084
|
-19.500
|
36.266
|
7.372
|
53.864
|
46.136
|
17.360
|
18.906
|
44.233
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
6287.134
|
2809.773
|
4625.856
|
5794.216
|
6512.684
|
4487.205
|
3368.332
|
2859.777
|
13875.800
|
5677.672
|
9191.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.491
|
0.907
|
0.433
|
0.137
|
-0.522
|
-0.404
|
-0.748
|
— | — | — | — | — | — |