Hg_chrom6_TN10mRNA_11332
Organism: Heterodera glycines Gene Locus: chr6:844024-851010 Feature type: polypeptideProtein Sequence
Length: 698
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.333 | 0.9 | 1.224 | 0.099 | 1.695 | 1.176 | 0.631 | 0.573 | 0.732 | 1.413 | 1.346 | 1.854 | 1.234 | 0.523 | 1.228 | 0.512 | 0.939 | 0.933 | 0.441 | 0.421 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10685
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|endoplasmic_reticulum
|
— |
KRREFVAPIRKLKNRQRQK,KKEAEEEGKKGTNEEEKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.475
|
0.173
|
0.017
|
0.516
|
0.749
|
0.130
|
0.162
|
0.028
|
0.230
|
0.449
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010224
|
1.000
|
1.000
|
Hsc_gene_22640.t1
|
Hsc_gene_22640.t1
|
— |
Q0VA61.2 Hypoxia up-regulated protein 1 [Xenopus tropicalis]
|
KAI1725554.1 hsp70 protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0140662
|
GO:0008150_0.894|GO:0005575_0.794|GO:0110165_0.786|GO:0009987_0.754|GO:0005622_0.682|GO:0016020_0.674|GO:0050896_0.650|GO:0005737_0.606|GO:0043226_0.589|GO:0006950_0.573|GO:0043229_0.560|GO:0071944_0.534|GO:0005886_0.527|GO:0043227_0.509
|
IPR013126+12-417+|IPR029048+431-542_459-539+|IPR043129+10-190_198-401+|IPR050451+423-632+
|
— |
PF00012+12-417+Hsp70_protein
|
G3DSA:3.90.640.10:FF:000004+247-333+Heat_shock_70_kDa_protein_4
|
PTHR45639+423-632+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
582-698
|
1.000
|
1-581
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
78400.370
|
5.269
|
-10.000
|
32.951
|
7.593
|
50.716
|
49.284
|
16.046
|
16.905
|
45.845
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
5055.145
|
3920.326
|
3851.126
|
7428.097
|
8519.952
|
5615.054
|
5768.891
|
3310.831
|
3422.415
|
5144.093
|
4406.231
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.254
|
0.785
|
1.056
|
0.166
|
-0.586
|
— |
-0.864
|
0.943
|
— |
1.291
|
— | — | — |
No JSON data available for plots.