Hg_chrom6_TN10mRNA_11340
Organism: Heterodera glycines Gene Locus: chr6:916746-921579 Feature type: polypeptideProtein Sequence
Length: 338
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.307 | 0.482 | 0.699 | 1.02 | 1.036 | 1.517 | 2.536 | 0.888 | 0.723 | 0.48 | 0.269 | 0.87 | 0.247 | 2.731 | 0.906 | 0.676 | 0.776 | 0.583 | 0.228 | 0.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10693
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
27-105
|
0.956
|
— | — |
0.000
|
— | — |
0.047
|
0.077
|
0.019
|
0.123
|
0.422
|
0.234
|
0.294
|
0.003
|
0.659
|
0.316
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010227
|
1.000
|
1.000
|
Hsc_gene_19751.t1
|
— | — | — |
KAF7629941.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+17-69+|IPR008160+198-254_264-322+|IPR050632+23-336+
|
SM01088+17-69+
|
PF01391+198-254_264-322+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR24637+23-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;73-338
|
1.000
|
5-72
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.959
|
33025.270
|
4.617
|
-10.000
|
18.047
|
4.438
|
35.503
|
64.497
|
7.988
|
10.059
|
68.935
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
301.401
|
39.073
|
13.204
|
25.463
|
458.583
|
1788.789
|
9.935
|
291.650
|
0.000
|
333.618
|
190.639
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.794
|
-0.756
|
1.054
|
4.136
|
1.979
|
-7.482
|
-2.732
|
-4.727
|
-9.188
|
5.527
|
— | — | — |
No JSON data available for plots.