Hg_chrom6_TN10mRNA_11348
Organism: Heterodera glycines Gene Locus: chr6:956943-965041 Feature type: polypeptideProtein Sequence
Length: 1,176
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.613 | 1.76 | 0.912 | 0.411 | 1.715 | 1.156 | 0.547 | 0.808 | 1.077 | 1.321 | 1.765 | 2.151 | 1.441 | 0.343 | 0.833 | 0.705 | 0.822 | 0.722 | 1.047 | 0.85 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10701
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
KKEQRRRKR,KKSAKKTMEKLLKTFKK,KKLQQENKNQKDKKKKDI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.250
|
0.208
|
0.018
|
0.292
|
0.402
|
0.504
|
0.352
|
0.018
|
0.424
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003994
|
2.000
|
1.000
|
Hsc_gene_1654.t1
|
— | — | — |
KAI3410494.1 hypothetical protein GPALN_004595 [Globodera pallida]
|
NOX27245
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
215-262;324-372
|
3.000
|
1-214;263-323;373-1176
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
137188.030
|
8.109
|
14.500
|
32.653
|
11.054
|
54.677
|
45.323
|
17.347
|
15.306
|
40.136
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1612.601
|
6.944
|
310.033
|
377.333
|
55.006
|
10.568
|
7.284
|
19.368
|
7152.208
|
1396.023
|
3862.959
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.255
|
5.630
|
0.392
|
-2.807
|
-2.368
|
— | — |
-1.281
|
— |
-4.078
|
-4.276
|
— | — |
No JSON data available for plots.