Hg_chrom6_TN10mRNA_11349
Organism: Heterodera glycines Gene Locus: chr6:969046-970507 Feature type: polypeptideProtein Sequence
Length: 158
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.472 | 0.442 | 0.921 | 0.436 | 0.738 | 1.785 | 0.753 | 1.899 | 0.563 | 0.599 | 1.151 | 1.489 | 1.406 | 0.73 | 1.679 | 1.175 | 1.038 | 0.863 | 0.0 | 0.931 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10702
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKERGVDMHASIKRRKDY
|
28-56
|
0.992
|
15-51
|
0.999
|
— | — |
0.000
|
— | — |
0.895
|
0.066
|
0.003
|
0.246
|
0.041
|
0.016
|
0.057
|
0.015
|
0.026
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000837
|
5.000
|
1.000
|
Hsc_gene_12131.t1
|
Hsc_gene_12131.t1
|
— | — |
OWF50539.1 SAP30-binding protein [Mizuhopecten yessoensis]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355
|
GO:0008150_0.919|GO:0005575_0.894|GO:0110165_0.894|GO:0005622_0.843|GO:0016020_0.806|GO:0043226_0.804|GO:0043229_0.798|GO:0050896_0.768|GO:0043227_0.749|GO:0043231_0.729|GO:0044419_0.690|GO:0009605_0.686|GO:0009607_0.686|GO:0043207_0.686|GO:0051707_0.686|GO:0044403_0.675|GO:0009615_0.674|GO:0005634_0.672|GO:0043228_0.672|GO:0043232_0.672|GO:0051702_0.670|GO:0051851_0.670|GO:0052472_0.670|GO:0031974_0.615|GO:0043233_0.608|GO:0070013_0.608|GO:0031981_0.606|GO:0005654_0.581|GO:0005856_0.562|GO:0045111_0.540
|
IPR012479+42-145_45-127+
|
— |
PF07818+45-127+HCNGP-like_protein
|
— |
PTHR13464+42-145+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;117-158
|
1.000
|
6-116
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
17564.810
|
10.421
|
13.000
|
29.114
|
12.025
|
52.532
|
47.468
|
19.620
|
9.494
|
51.266
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
41.535
|
29.096
|
29.881
|
29.745
|
30.747
|
24.246
|
16.447
|
31.213
|
37.783
|
81.611
|
62.828
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
-0.780
|
— | — | — | — | — |
No JSON data available for plots.