Hg_chrom6_TN10mRNA_11357
Organism: Heterodera glycines Gene Locus: chr6:1042522-1043507 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 0.89 | 0.795 | 1.696 | 0.729 | 0.981 | 0.39 | 1.366 | 1.214 | 1.034 | 0.497 | 1.929 | 2.429 | 0.841 | 1.338 | 1.171 | 0.985 | 1.159 | 2.102 | 0.482 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10710
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
— | — | — | — | — | — | — |
0.641
|
0.001
|
0.000
|
— |
0.435
|
0.146
|
0.040
|
0.429
|
0.185
|
0.342
|
0.110
|
0.158
|
0.161
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000247
|
9.000
|
1.000
|
Hsc_gene_2734.t1
|
Hsc_gene_24483.t1
|
— |
B4MU54.1 Ribosome biogenesis protein WDR12 homolog [Drosophila willistoni]
|
KHJ46860.1 FLYWCH zinc finger domain protein [Trichuris suis]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.869|GO:0110165_0.858|GO:0016020_0.776|GO:0005622_0.742|GO:0008150_0.542|GO:0071944_0.527|GO:0005737_0.520|GO:0005886_0.506
|
IPR001680+138-176+|IPR015943+77-183+|IPR018289+8-74+|IPR036322+141-178+
|
SM00320+138-176+
|
PF10551+8-74+MULE_transposase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
21052.390
|
7.814
|
4.500
|
21.311
|
15.847
|
43.169
|
56.831
|
12.568
|
8.743
|
49.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
116.083
|
9.072
|
12.311
|
8.483
|
4.678
|
8.914
|
34.912
|
48.916
|
0.514
|
459.748
|
262.933
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.983
|
2.351
|
— |
-9.163
|
— |
-6.480
|
— | — |