Hg_chrom6_TN10mRNA_11359
Organism: Heterodera glycines Gene Locus: chr6:1047919-1048537 Feature type: polypeptideProtein Sequence
Length: 98
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 0.949 | 0.557 | 1.056 | 0.34 | 1.57 | 0.972 | 1.531 | 0.68 | 1.655 | 0.155 | 1.801 | 1.701 | 1.374 | 0.625 | 1.603 | 1.171 | 0.618 | 3.14 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10712
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.725
|
0.320
|
0.008
|
0.485
|
0.058
|
0.248
|
0.064
|
0.205
|
0.027
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003298
|
2.000
|
1.000
|
Hsc_gene_24483.t1
|
Hsc_gene_24483.t1
|
— |
B4KKN1.1 Ribosome biogenesis protein WDR12 homolog [Drosophila mojavensis]
|
KAI3411753.1 putative 3',5'-cyclic phosphodiesterase pde-4, partial [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.858|GO:0110165_0.846|GO:0008150_0.735|GO:0016020_0.709|GO:0005622_0.689|GO:0009987_0.632|GO:0043226_0.601|GO:0065007_0.559|GO:0043229_0.554|GO:0050789_0.549|GO:0043227_0.548|GO:0050794_0.524|GO:0043231_0.523
|
IPR001680+2-40_7-49+|IPR015943+1-84+|IPR019775+27-41+|IPR036322+3-52+
|
— |
PF00400+2-40+WD_domain,_G-beta_repeat
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-98
|
8fky_SP
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
10650.160
|
6.694
|
0.500
|
12.245
|
13.265
|
40.816
|
59.184
|
7.143
|
5.102
|
56.122
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.738
|
0.149
|
0.222
|
0.506
|
1.076
|
0.490
|
1.722
|
4.446
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3.079
|
— | — | — | — | — | — |
No JSON data available for plots.