Hg_chrom6_TN10mRNA_11365
Organism: Heterodera glycines Gene Locus: chr6:1085463-1087092 Feature type: polypeptideProtein Sequence
Length: 356
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 1.633 | 0.409 | 0.581 | 0.468 | 0.792 | 0.234 | 0.983 | 2.247 | 1.86 | 0.468 | 0.991 | 2.965 | 0.702 | 0.688 | 1.043 | 0.875 | 1.064 | 1.08 | 0.909 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10717
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
50-71
|
0.944
|
— | — | — | — |
0.000
|
— | — |
0.136
|
0.057
|
0.022
|
0.093
|
0.355
|
0.091
|
0.126
|
0.103
|
0.816
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000425
|
5.000
|
3.000
|
Hsc_gene_15306.t1;Hsc_gene_15306.t2;Hsc_gene_7573.t1
|
— | — | — |
KAI1694357.1 srg family chemoreceptor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.550
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0007606|GO:0016020
|
— |
IPR000609+25-319+
|
— |
PF02118+25-319+Srg_family_chemoreceptor
|
— |
PTHR31552+26-339+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-356
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
40607.980
|
8.682
|
8.500
|
13.483
|
17.135
|
36.236
|
63.764
|
8.427
|
5.056
|
44.944
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
28.959
|
0.619
|
12.822
|
7.087
|
4.395
|
8.263
|
11.727
|
28.820
|
1.382
|
98.008
|
56.597
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.148
|
3.387
|
— | — | — | — |
1.694
|
-1.164
|
— | — | — | — | — |
No JSON data available for plots.