Hg_chrom6_TN10mRNA_11366
Organism: Heterodera glycines Gene Locus: chr6:1089419-1090921 Feature type: polypeptideProtein Sequence
Length: 441
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 0.633 | 1.031 | 0.391 | 1.02 | 0.872 | 1.026 | 1.247 | 1.058 | 1.164 | 1.031 | 1.734 | 1.575 | 1.265 | 1.62 | 0.713 | 1.041 | 0.996 | 1.221 | 0.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10718
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.777
|
0.329
|
0.017
|
0.326
|
0.133
|
0.063
|
0.054
|
0.026
|
0.043
|
0.206
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000066
|
1.000
|
18.000
|
Hsc_gene_14540.t1;Hsc_gene_15563.t1;Hsc_gene_16113.t1;Hsc_gene_1684.t1;Hsc_gene_1927.t1;Hsc_gene_20593.t1;Hsc_gene_21568.t1;Hsc_gene_21826.t1;Hsc_gene_24453.t1;Hsc_gene_25560.t1;Hsc_gene_25561.t1;Hsc_gene_2880.t1;Hsc_gene_2881.t1;Hsc_gene_3911.t1;Hsc_gene_6025.t1;Hsc_gene_776.t1;Hsc_gene_777.t1;Hsc_gene_9095.t1
|
Hsc_gene_24453.t1
|
— | — |
CAD2178971.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
356-441
|
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
49459.000
|
10.141
|
18.500
|
29.025
|
10.431
|
46.485
|
53.515
|
17.234
|
11.791
|
48.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
497.945
|
3.972
|
7.314
|
5.386
|
8.771
|
11.232
|
33.913
|
13.292
|
0.000
|
2147.053
|
1226.888
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.608
|
— |
1.500
|
-11.863
|
— |
-7.617
|
— | — |
No JSON data available for plots.