SCN Proteipedia

Hg_chrom6_TN10mRNA_11378

Organism: Heterodera glycines Gene Locus: chr6:1169049-1178650 Feature type: polypeptide

Protein Sequence

Length: 920

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.112	1.517	0.771	1.124	0.942	1.115	0.854	2.283	0.604	0.852	0.725	1.918	0.725	0.982	0.976	1.972	1.069	0.511	0.251	0.32	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_10730	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-Not_Clustered	0.665

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRNCSEEPRHKTKSR,KRRSRKRPSARRQRS,ANAKRRSRKRPSARRQR	—	—	—	—	—	—	0.000	—	—	0.957	0.043	0.028	0.206	0.011	0.015	0.010	0.018	0.035	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010232	1.000	1.000	Hsc_gene_15302.t1	Hsc_gene_15302.t1	—	H2L008.1 Zinc finger protein ztf-16 [Caenorhabditis elegans]	KAI1725724.1 asparagine-rich zinc finger protein AZF1 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.913\|GO:0009987_0.831\|GO:0065007_0.827\|GO:0005575_0.825\|GO:0110165_0.825\|GO:0050789_0.823\|GO:0050794_0.812\|GO:0005622_0.784\|GO:0008152_0.783\|GO:0019222_0.783\|GO:0031323_0.783\|GO:0044237_0.783\|GO:0043170_0.765\|GO:0060255_0.765\|GO:0009058_0.762\|GO:0009059_0.762\|GO:0009889_0.762\|GO:0010556_0.762\|GO:0031326_0.762\|GO:0044249_0.762\|GO:0043226_0.760\|GO:0016020_0.755\|GO:0010467_0.750\|GO:0010468_0.750\|GO:0043229_0.747\|GO:0005634_0.713\|GO:0043227_0.713\|GO:0043231_0.713\|GO:0003674_0.673\|GO:0005488_0.673\|GO:0032502_0.659\|GO:0048856_0.659\|GO:0044238_0.622\|GO:0080090_0.622\|GO:0032501_0.610\|GO:0006139_0.587\|GO:0016070_0.587\|GO:0019219_0.587\|GO:0090304_0.587\|GO:0032774_0.586\|GO:0034654_0.586\|GO:0141187_0.586\|GO:0006351_0.582\|GO:0051252_0.582\|GO:0048518_0.581\|GO:0006355_0.576\|GO:2001141_0.576\|GO:0048522_0.567\|GO:0007275_0.557\|GO:0003676_0.555\|GO:0097159_0.555\|GO:0003677_0.525\|GO:0009893_0.515\|GO:0048731_0.509\|GO:0010604_0.503	IPR013087+9-31_181-203_211-233_211-238_213-233_239-261_241-261_268-293_270-293_301-324_303-324_867-889_867-894_869-889_895-919_897-919+\|IPR036236+10-203_210-261_869-915+\|IPR050888+546-916+	SM00355+9-31_181-203_211-233_239-261_268-293_301-324_867-889_895-919+	PF00096+211-233+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000446+210-234+Zinc_finger_protein\|G3DSA:3.30.160.60:FF:003608+236-265+Zinc_finger_and_BTB_domain-containing_32	PTHR24406+546-916+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-190;322-510;560-813	3.000	191-321;511-559;814-920	1mey_G	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.924	98391.770	7.338	18.000	24.022	8.587	55.217	44.783	14.130	9.891	59.565

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	1219.577	767.034	964.265	926.786	821.720	662.429	703.442	749.462	313.947	3002.010	1849.983

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.136	—	-0.206	-0.296	—	—	—	—	—	—	—	—

No JSON data available for plots.

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