Hg_chrom6_TN10mRNA_11384
Organism: Heterodera glycines Gene Locus: chr6:1244240-1248443 Feature type: polypeptideProtein Sequence
Length: 676
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 0.894 | 1.13 | 0.357 | 1.282 | 2.39 | 0.599 | 1.479 | 1.151 | 1.339 | 0.986 | 1.305 | 1.109 | 0.74 | 1.57 | 0.74 | 0.897 | 0.493 | 1.365 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10736
|
— | — |
1.333
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.500
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNLAKKIADVIDRDRSR,RRQLEQQAKDQPTTSTRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.879
|
0.128
|
0.021
|
0.270
|
0.072
|
0.063
|
0.054
|
0.032
|
0.086
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000079
|
6.000
|
11.000
|
Hsc_gene_11676.t1;Hsc_gene_24520.t1;Hsc_gene_24520.t2;Hsc_gene_24523.t1;Hsc_gene_24523.t2;Hsc_gene_3438.t1;Hsc_gene_5165.t1;Hsc_gene_5520.t1;Hsc_gene_5520.t2;Hsc_gene_5521.t1;Hsc_gene_5521.t2
|
Hsc_gene_19189.t2;Hsc_gene_3114.t1;Hsc_gene_762.t1
|
— | — |
CAD2181529.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+341-505+
|
— |
PF06918+341-505+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+201-504+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
101-305;643-676
|
2.000
|
1-100;306-642
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
77893.100
|
8.011
|
12.000
|
31.065
|
9.763
|
54.882
|
45.118
|
17.160
|
13.905
|
41.716
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
73.790
|
38.024
|
28.364
|
27.241
|
30.882
|
15.051
|
21.241
|
28.101
|
284.854
|
38.353
|
143.996
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.650
|
-0.619
|
— | — |
-1.022
|
— |
0.798
|
— | — | — | — | — | — |
No JSON data available for plots.