Hg_chrom6_TN10mRNA_11392
Organism: Heterodera glycines Gene Locus: chr6:1320959-1326808 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.128 | 0.913 | 0.882 | 0.876 | 0.462 | 1.303 | 1.347 | 2.194 | 1.026 | 1.03 | 0.14 | 1.494 | 1.155 | 0.666 | 1.367 | 0.99 | 0.947 | 0.805 | 1.599 | 1.562 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10744
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
PAQKRTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.057
|
0.062
|
0.016
|
0.165
|
0.265
|
0.589
|
0.352
|
0.005
|
0.770
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010234
|
1.000
|
1.000
|
Hsc_gene_15327.t1
|
Hsc_gene_15327.t1
|
— | — |
KAF7632763.1 Tetraspanin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.960|GO:0009987_0.894|GO:0032501_0.814|GO:0005575_0.766|GO:0110165_0.766|GO:0071944_0.733|GO:0005886_0.702|GO:0016020_0.702|GO:0003674_0.653|GO:0032502_0.645|GO:0048856_0.645|GO:0007275_0.625|GO:0048731_0.611|GO:0048869_0.586|GO:0007399_0.585|GO:0030154_0.582|GO:0050896_0.537|GO:0005488_0.532
|
IPR008952+173-245_174-244+|IPR018499+33-112_34-268_142-278+
|
— |
PF00335+33-112_142-278+Tetraspanin_family
|
— |
PTHR19282+34-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
330-433
|
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
47701.580
|
7.528
|
9.500
|
19.630
|
15.935
|
41.339
|
58.661
|
12.009
|
7.621
|
53.811
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
466.008
|
577.788
|
493.518
|
478.057
|
437.769
|
526.868
|
811.234
|
439.349
|
155.446
|
510.483
|
358.324
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.458
|
-0.410
|
— |
-0.159
|
0.282
|
0.631
|
-0.368
|
1.026
|
— | — | — | — | — |
No JSON data available for plots.