Hg_chrom6_TN10mRNA_11393
Organism: Heterodera glycines Gene Locus: chr6:1327786-1340551 Feature type: polypeptideProtein Sequence
Length: 815
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.484 | 1.398 | 0.535 | 0.635 | 0.409 | 1.573 | 0.993 | 1.166 | 0.791 | 0.846 | 0.204 | 1.01 | 1.261 | 0.991 | 0.977 | 1.928 | 1.207 | 0.93 | 1.321 | 0.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10745
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRRR
|
— | — |
20-40
|
0.795
|
— | — |
0.000
|
— | — |
0.432
|
0.253
|
0.014
|
0.337
|
0.433
|
0.172
|
0.322
|
0.078
|
0.152
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004301
|
1.000
|
2.000
|
Hsc_gene_15328.t1;Hsc_gene_15328.t2
|
— | — |
Q6NPT7.1 ERAD-associated E3 ubiquitin-protein ligase HRD1B [Arabidopsis thaliana]
|
KAI1732048.1 RING-type zinc-finger domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0061630|GO:1904294
|
GO:0008150_0.912|GO:0005575_0.808|GO:0110165_0.808|GO:0009987_0.786|GO:0050896_0.679|GO:0016020_0.676|GO:0003674_0.628|GO:0071944_0.600|GO:0005886_0.568|GO:0051716_0.563|GO:0008152_0.537|GO:0065007_0.537|GO:0005622_0.528|GO:0050789_0.516|GO:0043170_0.510|GO:0044238_0.501
|
IPR001841+755-794_756-793_756-794+|IPR013083+737-806+|IPR017907+771-780+|IPR044235+188-807+
|
SM00184+756-793+
|
PF13639+755-794+Ring_finger_domain
|
— |
PTHR15860+188-807+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-480
|
1.000
|
481-815
|
4ayc_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
85376.780
|
8.242
|
15.500
|
13.865
|
9.693
|
46.871
|
53.129
|
8.466
|
5.399
|
64.049
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
1130.671
|
1087.045
|
945.382
|
895.187
|
1183.536
|
1820.347
|
1941.466
|
1267.260
|
788.724
|
927.558
|
868.058
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.432
|
-0.417
|
— |
0.371
|
0.635
|
— |
-0.631
|
0.758
|
— | — | — | — | — |
No JSON data available for plots.