Hg_chrom6_TN10mRNA_11394
Organism: Heterodera glycines Gene Locus: chr6:1347726-1354816 Feature type: polypeptideProtein Sequence
Length: 520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 1.342 | 0.629 | 1.127 | 0.513 | 1.923 | 0.71 | 2.5 | 0.94 | 0.988 | 0.874 | 1.923 | 1.282 | 1.368 | 1.845 | 1.044 | 0.914 | 0.466 | 0.888 | 0.509 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10746
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.895
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
mitochondria
|
KNRTKK,KKKIKNSFCWPNRRSMR,KRQRHRRLMRSSRRTRRN
|
23-43
|
0.988
|
— | — | — |
0.848
|
0.090
|
1.000
|
— |
0.163
|
0.030
|
0.009
|
0.260
|
0.263
|
0.364
|
0.235
|
0.036
|
0.736
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004302
|
1.000
|
2.000
|
Hsc_gene_15330.t1;Hsc_gene_24720.t1
|
Hsc_gene_24720.t1
|
— |
G5EF33.1 Abnormal cell migration protein 13 [Caenorhabditis elegans]
|
KAF7632759.1 CUB domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.480
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.970|GO:0065007_0.957|GO:0050789_0.955|GO:0009987_0.948|GO:0050794_0.948|GO:0005575_0.930|GO:0110165_0.930|GO:0016020_0.883|GO:0048518_0.871|GO:0048522_0.861|GO:0071944_0.754|GO:0005886_0.736|GO:0048870_0.706|GO:0016477_0.703|GO:0040011_0.689|GO:0030334_0.685|GO:0040012_0.685|GO:2000145_0.685|GO:0030335_0.684|GO:0040017_0.684|GO:2000147_0.684|GO:0098590_0.597|GO:0042995_0.586|GO:0120025_0.585|GO:0043005_0.575|GO:0036477_0.564|GO:0030424_0.559|GO:0044297_0.559|GO:0043025_0.556
|
IPR035914+51-171_53-119+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
223-282;341-520
|
2.000
|
1-222;283-340
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
59540.100
|
10.874
|
56.000
|
26.346
|
12.500
|
52.500
|
47.500
|
19.808
|
6.538
|
47.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1098.086
|
177.281
|
253.282
|
127.624
|
102.985
|
156.434
|
170.344
|
165.107
|
28.030
|
4350.709
|
2498.133
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.286
|
-0.611
|
-0.880
|
-0.341
|
0.618
|
— | — | — |
-4.869
|
— |
-2.749
|
— | — |