Hg_chrom6_TN10mRNA_11398
Organism: Heterodera glycines Gene Locus: chr6:1384374-1385436 Feature type: polypeptideProtein Sequence
Length: 107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 0.652 | 0.85 | 0.645 | 0.623 | 1.917 | 0.779 | 1.402 | 2.077 | 1.389 | 1.274 | 1.649 | 0.779 | 0.719 | 1.335 | 0.534 | 1.839 | 0.425 | 0.0 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10749
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.579
|
0.151
|
0.042
|
0.431
|
0.152
|
0.028
|
0.023
|
0.003
|
0.129
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001047
|
4.000
|
1.000
|
Hsc_gene_12320.t1
|
— | — |
P59271.2 Ubiquitin-ribosomal protein eS31z fusion protein [Arabidopsis thaliana]
|
UCZ39325.1 ubiquitin UBQ2, partial [Cymbidium sinense]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.911|GO:0110165_0.904|GO:0005622_0.818|GO:0043226_0.734|GO:0043229_0.723|GO:0005737_0.699|GO:0016020_0.668|GO:0003674_0.586|GO:0043227_0.584|GO:0043231_0.578|GO:0008150_0.509
|
IPR000626+15-86_15-90_17-84+|IPR019956+25-45_46-66_67-88+|IPR029071+13-91+|IPR050158+16-98+
|
SM00213+15-86+
|
PF00240+17-84+Ubiquitin_family
|
G3DSA:3.10.20.90:FF:000160+15-90+Polyubiquitin-C
|
PTHR10666+16-98+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
97-107
|
1.000
|
1-96
|
4zpz_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
12024.020
|
10.414
|
8.500
|
26.168
|
7.477
|
51.402
|
48.598
|
17.757
|
8.411
|
43.925
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.507
|
0.306
|
0.471
|
0.512
|
0.156
|
1.242
|
0.202
|
0.268
|
1.382
|
0.000
|
0.592
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.